Multi-omics approaches for diagnostics Authors: Becker J, Moucadel V – With BioMérieux Table ronde, Lyonbiopole, Lyon, France
Evaluation of integrative clustering methods for the analysis of multi-omics data Authors: Chauvel C, Novoloaca A, Veyre P, Reynier F, Becker J Conference: UseR 2019, Toulouse, France
BioTracs-MIMOSA: Mass spectrometry processing of Metabolomics Data Authors: Abi-Ghanem J, Hennig K, Ouattara D;A, Bequet F. RFMF, Clermont Ferrand, France
Identification by MALDI-TOF (VITEK® MS) of the highly pathogenic species: Burkholderia mallei and Burkholderia pseudomallei Authors: Monnin V, Polsinelli S, Jacob D, Arend S, Boisse C, Michel F, Celliere B, Courault P, Villet R, Durand G, GirardV Conference: ECCMID 2019, Amsterdam, the Netherlands
2018
Combination of ribosome display and next generation sequencing as a powerful method for identification of affibody binders against β-lactamase CTX-M15 Authors: Lagoutte P, Potisopon S, Elie C, Donnat S, Mignon C, Stadthagen Gomez G, Werle B Conference: PEGS 2018, Lisbon, Portugal
GM15, a new gnotobiotic mouse model to explore interactions between microbiome and host physiology in childhood stunting induced by chronic undernutrition Authors: Darnaud M, Bogeat P, Dugua H, Schwarzer M, Leulier F, Tamellini A Conference: ICSB 2018, Lyon, France
Comparison DNA extraction methods for the analysis of the human gut microbiome using 16S and whole-genome sequencing Authors: Elie C, Perret M, Louis K, Fritah-Lafont A, Laissner P, Vachon C, Rostaing H, Gervasi G, Reynier F, Saliou A – with BioMérieux Conference: ICCMG, Geneva, Switzerland
Benchmark of unsupervised cytometry data analysis methods for the comparison of population Authors: Courbon B, Beitz B, Delgado A, Sapay N Conference: ICSB, Lyon, France
Encapsulin nanocages for simoultaneous surface dispaly and cargo loading Authors: Mignon C, Lagoutte P, Donnat S, Potisopon S, Werle B
LUMI-Seq™ – Reconstruction of near full-lenght 16S rRNA genes using Illumina short reads Authors: Elie C, Hirel j, Baum C, Reynier F, Saliou A Conference: EMBL, Heidelberg, Germany
An automatic platform for Genome-Scale Metabolic Model reconstruction and Analysis Authors: Ouattara D.A, Joseph C, Bunescu A, Abi-Ghanem J, Bequet F Conference, ECCB 2018, Athens, Greece
InsightCell – online monitoring of living cells metabolism Authors: Bunescu A, Codina A, Pennestri M Conference: Translational Immunometabolism, Basel, Switzerland
Towards the deciphering of the MoA of an experimental drug against Chagas disease, using multi-omics platform Authors: Hennig K, Abi Ghanem J, Bunescu A, Meniche X, Biliaut E, Bequet F, Lewis M, Kelly J, Braillard S, Courtemanche G, Chatelain E.
Childhood stunting model induced by chronic undernutrition in gnotobiotic mice Authors: Darnaud M, Bogeat P, Dugua H, Schwarzer M, Leulier F, Tamellini A. Conference: Keystone Symposia Microbiome, Banff, Canada
2017
Multi-omic Pathway Enrichment Analysis Authors: Angelin-Bonnet O, Ouattara D. A, Reynier F., Becker J. Conference: EMBL, Heidelberg, Germany
Development of an analytical workflow for the characterization of the microbiota metabolome using a combination of NMR and MS, through targeted & untargeted approaches Authors: Hennig K, Bunescu A, Ouattara D.A, Meniche X, Abi Ghanem J, Biliaut E, Bequet F Conference: HPLC 2017, Prague, Czech republic
Combinatorial design for random molecular cloning and screening of high yield expression vectors Authors: Mariano N, Mignon C, Stadthagen Gomez G, Donnat S, Lagoutte P, Werle B Conference: Recombinant Protein Production, Dubrovnik, Croatie
BIOSPECIMENS v1.5: a web platform to facilitate collaborative research on infectious diseases Authors: Louis K, Rimbault B, Delestre C, Mouscaz Y, Albrieux M, Boisse C, Villet R, Boissy G Conference: JOBIM, 2017
2016
Evaluation of integrative approaches for the analysis of multi_omics data Authors: Novoloaca A, Reynier F, Becker J JOBIM, 2016
Protein sequence recoding, codon usage bias on the bench Authors: Mariano N, Mignon C, Chenavas S, Stadthagen G, Lugari A, Perot C., Donnat S, Lagoutte P, Diot F, Sodoyer R, Werle B Conference: PEGS Boston
Met-SAMoA (Metabolic Screening of Antimicrobial Mode of Action) Development of an integrated NMR/MS metabolomics approach for the determination of the novelty of new antimicrobials mechanisms of action based on their metabolic signature Authors: Bunescu A, Ouattara D.A, Meniche X, Billaut E, Boisse C, Tambosco J and Bequet F Conference: ECCMID 2016, Amsterdam, NL
Development of an improved protocol for lipid analysis based on heat inactivation of enzymes Authors: Meniche X, Ouattara D.A, Hennig K, Sköld K, Boren M, Elias Y, Biliaut E, Bogeat P, Boisse C, Peltier M, Jacob C, Bunescu A, Bequet F Conference: IPID MAPS Annual Meeting 2016, La Jolla, US
Prevention of metabolite change due to enzymatic post-sample activity using heat based enzyme inactivation Authors: Bunescu A, Ouattara D. A, Sköld K, Boren M, Biliaut E, Hennig K ,Bogeat P, Boisse C, Peltier M, Meniche X, Jacob C, Bequet F Conference: 5th International Conference and Exhibition on Metabolomics, Osaka, Japan
The bioinformatics timeline of the data integration in BIOASTER Authors: Mouscaz Y, Cauchard A, Malinovic A, Picandet L, Sapay N, Veyre P and Boissy G Conference: JeBiF Workshop @ JOBIM 2016 Lyon
Validation of methods to characterize and monitor injury-induced immune deficiency in severe intensive care unit patients Authors: Rol M.L, Moucadel V, Cerrato E, Riffaud C, Gallet-Gorius E, Portier A, Demaret J, Tabone O, Malcus C, Rimmele T, Monneret G, Textoris J, Venet F, On behalf of the Realism Study Group Conference: Congres ESID Barcelona
2015
BIOSPECIMEN: a web platform developed to facilitate research on infectious diseases & microbiota Authors: Louis K, Rimbault B, Gaillard C, Costaz L, Guyard C, Khlebnikov A and Troesch A Conference: CCO XXXIV European Culture Collections as tools in research and biotechnology. Paris
Comparative Analysis – A Balb/c Mice Core Gut Microbiome? Authors: Boucinha L, Reynier F, Schwarzer M, Leulier F, van Hijum S Conference: The Human Microbiome, EMBL conference, Heidelberg, Germany, June 2015
Insight into the Protein and Expression Systems Engineering unit of Bioaster, a technology institute specialized in infectious diseases and microbiology Authors: Donnat S, Lagoutte P, Lugari A, Mignon C, Sodoyer R, Stadthagen G and Werle B Conference: French Brazilian Biomedical Innovation Forum, San Paoulo Instituit Butantan
Controlled ultrasound cavitation for DNA delivery into bacteria and yeast/ Award for best poster Authors: Stadthagen G, Mignon C, Mestas J-L, Donnat S, Poncet E, Sodoyer R, Lafon C, Werle B Conference: International Conference of Synthetic Biology, Houston, Sept 2015
Fast protein liquid chromatography based purification of MS2 bacteriophage virus-like particles Authors: Lagoutte P, Mignon C, Donnat S, Mast J, Lugari A and Werle B Conference: Word vaccine congres Europe, Madrid, 9 au 12 novembre 2015
A new animal facility in Lyon Gerland area to explore microbiome Authors: Darnaud M, Peltier M, Tamellini A et al Conference: 8ème Journée Scientifique de la SFR Biosciences, Lyon
BIOASTER: Animal models and imaging competencies to improve chlamydial studies Authors: Rekiki A, Darnaud M, Gaudin A , Peltier M, Bogeat P, Tamellini A Conference: European meeting on animal chlamydiosis
Multi-omics data integration platform in public-private partnership Authors: Sapay N, Veyre P, Le Carrour T, Cauchard A, Garnier J Conference: JOBIM, Clermont-Ferrand
Evaluation of heat stabilization for the conservation of biological samples as an approach for metabolomics: a 1H-NMR/LC-MS metabolite profiling study Authors: Bequet F, Bunescu A, Ouattara D.A, Meniche X, Da Costa Jacob C, Billiaut E, Bogeat P, Gaillard C, Peltier M, Sköld K, Boren M, Tamellini A, Guyard C, Troesch A Conference: Metabolomics Conference 2015 – San Francisco (US)
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