Posters & Application notes

2019

• Multi-omics approaches for diagnostics
  Authors: Becker J, Moucadel V – With BioMérieux
  Table ronde, Lyonbiopole, Lyon, France
• Evaluation of integrative clustering  methods for the analysis of multi-omics data
  Authors: Chauvel C, Novoloaca A, Veyre P, Reynier F, Becker J
  Conference: UseR 2019, Toulouse, France
• BioTracs-MIMOSA: Mass spectrometry processing of Metabolomics Data
  Authors: Abi-Ghanem J, Hennig K, Ouattara D;A, Bequet F.
  RFMF, Clermont Ferrand, France
• Identification by MALDI-TOF (VITEK® MS) of the highly pathogenic species: Burkholderia mallei and Burkholderia pseudomallei
  Authors: Monnin V, Polsinelli S, Jacob D, Arend S, Boisse C, Michel F, Celliere B, Courault P, Villet R, Durand G, GirardV
  Conference: ECCMID 2019, Amsterdam, the Netherlands

2018

• Combination of ribosome display and next generation sequencing as a powerful method for identification of affibody binders against β-lactamase CTX-M15
  Authors: Lagoutte P, Potisopon S, Elie C, Donnat S, Mignon C, Stadthagen Gomez G, Werle B
  Conference: PEGS 2018, Lisbon, Portugal

• GM15, a new gnotobiotic mouse model to explore interactions between microbiome and host physiology in childhood stunting induced by chronic undernutrition
  Authors: Darnaud M, Bogeat P, Dugua H, Schwarzer M, Leulier F, Tamellini A
  Conference: ICSB 2018, Lyon, France
• Comparison DNA extraction methods for the analysis of the human gut microbiome using 16S and whole-genome sequencing
  Authors: Elie C, Perret M, Louis K, Fritah-Lafont A, Laissner P, Vachon C, Rostaing H, Gervasi G, Reynier F, Saliou A – with BioMérieux
  Conference: ICCMG, Geneva, Switzerland
• Benchmark of unsupervised cytometry data analysis methods for the comparison of population
  Authors: Courbon B, Beitz B, Delgado A, Sapay N
  Conference: ICSB, Lyon, France
• Encapsulin nanocages for simoultaneous surface dispaly and cargo loading
  Authors: Mignon C, Lagoutte P, Donnat S, Potisopon S, Werle B
• LUMI-Seq™ – Reconstruction of near full-lenght 16S rRNA genes using Illumina short reads
  Authors: Elie C, Hirel j, Baum C, Reynier F, Saliou A
  Conference: EMBL, Heidelberg, Germany
• An automatic platform for Genome-Scale Metabolic Model reconstruction and Analysis
  Authors: Ouattara D.A, Joseph C, Bunescu A, Abi-Ghanem J, Bequet F
  Conference, ECCB 2018, Athens, Greece

• InsightCell – online monitoring of living cells metabolism
  Authors: Bunescu A, Codina A, Pennestri M
  Conference: Translational Immunometabolism, Basel, Switzerland
• Towards the deciphering of the MoA of an experimental drug against Chagas disease, using multi-omics platform
  Authors: Hennig K, Abi Ghanem J, Bunescu A, Meniche X, Biliaut E, Bequet F, Lewis M, Kelly J, Braillard S, Courtemanche G, Chatelain E.
• Childhood stunting model induced by chronic undernutrition in gnotobiotic mice
  Authors: Darnaud M, Bogeat P, Dugua H, Schwarzer M, Leulier F, Tamellini A.
  Conference: Keystone Symposia Microbiome, Banff, Canada

2017

• Multi-omic Pathway Enrichment Analysis
  Authors: Angelin-Bonnet O, Ouattara D. A, Reynier F., Becker J.
  Conference: EMBL, Heidelberg, Germany
• Development of an analytical workflow for the characterization of the microbiota metabolome using a combination of NMR and MS, through targeted & untargeted approaches
  Authors: Hennig K, Bunescu A, Ouattara D.A, Meniche X, Abi Ghanem J, Biliaut E, Bequet F
  Conference: HPLC 2017, Prague, Czech republic
• Combinatorial design for random molecular cloning and screening of high yield expression vectors
  Authors: Mariano N, Mignon C, Stadthagen Gomez G, Donnat S, Lagoutte P, Werle B
  Conference: Recombinant Protein Production, Dubrovnik, Croatie
• BIOSPECIMENS v1.5: a web platform to facilitate collaborative research on infectious diseases
  Authors: Louis K, Rimbault B, Delestre C, Mouscaz Y, Albrieux M, Boisse C, Villet R, Boissy G
  Conference: JOBIM, 2017

2016

• Evaluation of integrative approaches for the analysis of multi_omics data
  Authors: Novoloaca A, Reynier F, Becker J
  JOBIM, 2016
• Protein sequence recoding, codon usage bias on the bench
  Authors: Mariano N, Mignon C, Chenavas S, Stadthagen G, Lugari A, Perot C., Donnat S, Lagoutte P, Diot F, Sodoyer R, Werle B
  Conference: PEGS Boston
• Met-SAMoA (Metabolic Screening of Antimicrobial Mode of Action) Development of an integrated NMR/MS metabolomics approach for the determination of the novelty of new antimicrobials mechanisms of action based on their metabolic signature
  Authors: Bunescu A, Ouattara D.A, Meniche X, Billaut E, Boisse C, Tambosco J and Bequet F
  Conference: ECCMID 2016, Amsterdam, NL
• Development of an improved protocol for lipid analysis based on heat inactivation of enzymes
  Authors: Meniche X, Ouattara D.A, Hennig K, Sköld K, Boren M, Elias Y, Biliaut E, Bogeat P, Boisse C, Peltier M, Jacob C, Bunescu A, Bequet F
  Conference: IPID MAPS Annual Meeting 2016, La Jolla, US
• Prevention of metabolite change due to enzymatic post-sample activity using heat based enzyme inactivation
  Authors: Bunescu A, Ouattara D. A, Sköld K, Boren M, Biliaut E, Hennig K ,Bogeat P, Boisse C, Peltier M, Meniche X, Jacob C, Bequet F
  Conference: 5th International Conference and Exhibition on Metabolomics, Osaka, Japan
• The bioinformatics timeline of the data integration in BIOASTER
  Authors: Mouscaz Y, Cauchard A, Malinovic A, Picandet L, Sapay N, Veyre P and Boissy G
  Conference: JeBiF Workshop @ JOBIM 2016 Lyon
• Validation of methods to characterize and monitor injury-induced immune deficiency in severe intensive care unit patients
  Authors: Rol M.L, Moucadel V, Cerrato E, Riffaud C, Gallet-Gorius E, Portier A, Demaret J, Tabone O, Malcus C, Rimmele T, Monneret G, Textoris J, Venet F, On behalf of the Realism Study Group
  Conference: Congres ESID Barcelona

2015

• BIOSPECIMEN: a web platform developed to facilitate research on infectious diseases & microbiota
  Authors: Louis K, Rimbault B, Gaillard C, Costaz L, Guyard C, Khlebnikov A and Troesch A
  Conference: CCO XXXIV European Culture Collections as tools in research and biotechnology. Paris
• Comparative Analysis – A Balb/c Mice Core Gut Microbiome?
  Authors: Boucinha L, Reynier F, Schwarzer M, Leulier F, van Hijum S
  Conference: The Human Microbiome, EMBL conference, Heidelberg, Germany, June 2015
• Insight into the Protein and Expression Systems Engineering unit of Bioaster, a technology institute specialized in infectious diseases and microbiology
  Authors: Donnat S, Lagoutte P, Lugari A, Mignon C, Sodoyer R, Stadthagen G and Werle B
  Conference: French Brazilian Biomedical Innovation Forum, San Paoulo Instituit Butantan

• Controlled ultrasound cavitation for DNA delivery into bacteria and yeast/ Award for best poster
  Authors: Stadthagen G, Mignon C, Mestas J-L, Donnat S, Poncet E, Sodoyer R, Lafon C, Werle B
  Conference: International Conference of Synthetic Biology, Houston, Sept 2015

• Fast protein liquid chromatography based purification of MS2 bacteriophage virus-like particles
  Authors: Lagoutte P, Mignon C, Donnat S, Mast J, Lugari A and Werle B
  Conference: Word vaccine congres Europe, Madrid, 9 au 12 novembre 2015
• A new animal facility in Lyon Gerland area to explore microbiome
  Authors: Darnaud M, Peltier M, Tamellini A et al
  Conference: 8ème Journée Scientifique de la SFR Biosciences, Lyon
• BIOASTER: Animal models and imaging competencies to improve chlamydial studies
  Authors: Rekiki A, Darnaud M, Gaudin A , Peltier M, Bogeat P, Tamellini A
  Conference: European meeting on animal chlamydiosis
• Multi-omics data integration platform in public-private partnership
  Authors: Sapay N, Veyre P, Le Carrour T, Cauchard A, Garnier J
  Conference: JOBIM, Clermont-Ferrand
• Evaluation of heat stabilization for the conservation of biological samples as an approach for metabolomics: a 1H-NMR/LC-MS metabolite profiling study
  Authors: Bequet F, Bunescu A, Ouattara D.A, Meniche X, Da Costa Jacob C, Billiaut E, Bogeat P, Gaillard C, Peltier M, Sköld K, Boren M, Tamellini A, Guyard C, Troesch A
  Conference: Metabolomics Conference 2015 – San