2022
- A gaps-and-needs analysis of vaccine R&D in Europe: Recommendations to improve the research infrastructure
Authors: Stefan Jungblut, Hilde Depraetere, Monika Slezak, Dennis Christensen, Norbert Stockhofe, Laurent Beloeil
10.1016/j.biologicals.2022.02.003
- Species-targeted sorting and cultivation of commensal bacteria from the gut microbiome using flow cytometry under anaerobic conditions
Authors: Samuel Bellais, Mélanie Nehlich, Maryne Ania, Aurore Duquenoy, Wilfrid Mazier, Ger van den Engh, Jan Baijer, Nicole Simone Treichel, Thomas Clavel, Ilia Belotserkovsky & Vincent Thomas
https://doi.org/10.1186/s40168-021-01206-7
2021
Monocyte Trajectories Endotypes Are Associated With Worsening in Septic Patients
Authors: Bodinier M, Peronnet E, Brengel-Pesce K , Conti F, Rimmelé T, Textoris J, Vedrine C, Quemeneur L, Griffiths A. D., Tan L. K. , Venet F, Maucort-Boulch D, Monneret G, for the REALISM study group
https://doi.org/10.3389/fimmu.2021.795052
A standardized gnotobiotic mouse model harboring a minimal 15-member mouse gut microbiota recapitulates SOPF/SPF phenotypes
Authors: Darnaud M, De Vadder F, Bogeat P, Boucinha L, Bulteau A. L, Bunescu A, Couturier C, Delgado A, Dugua H, Elie C, Mathieu A, Novotnà T, Ouattara D. A, Planel S, Saliou A, Srutkova D, Yansouni J, Stecher B, Schwarzer M. , Leulier F, Tamellini A
https://doi.org/10.1038/s41467-021-26963-9
Herpes DNAemia and TTV Viraemia in Intensive Care Unit Critically III patients: A single-Centre Propsective Longitudinal study
Authors: Mallet F, Diouf L, Meunier B, Perret M, Reynier F, Leissner P, Quemeneur L , Griffiths A.D, Moucadel V, PachotA , Venet F, Monneret G, Lepape A, Rimmelé T, TanL. K, Brengel-Pesce K and Textoris J on behalf of the REALISM Study Group
https://doi.org/10.3389/fimmu.2021.698808
Blood transcriptomics reveal the evolution and resolution of the immune response in tuberculosis
Authors: Tabone O, Verma R, Singhania A, Chakravarty P, Branchett W.J, Graham C.M, Lee J, Trang T, Reynier F, Leissner P, Kaiser K, Rodrigue M, Woltmann G, Haldar P, O’Garra A.
https://doi.org/10.1084/jem.20210915
Assessing the Functional Heterogeneity of Monocytes in Human Septic Shock: a Proof-of-Concept Microfluidic Assay of TNFα Secretion
Authors: Llitjos JF, Bounab Y, Rousseau C, Dixneuf S, Rimbault B, Chiche JF, Textoris J, Pène F. Védrine C.
Front. Immunol., 05 July 2021 | https://doi.org/10.3389/fimmu.2021.686111
Antibody avidity, persistence, and response to antigen recall: comparison of vaccine adjuvants
Authors: Budroni S, Buricchi F, Cavallone A, Bourguignon P, Caubet M, Dewar V, D’Oro U, Finco O, Garçon N, El Idrissi M, Janssens M, Leroux-Roels G, Marchant A, Schwarz T, Van Damme P, Volpini G, van der Most R, Didierlaurent AM, Burny W.
NPJ Vaccines. 2021 May 21;6(1):78. doi: 10.1038/s41541-021-00337-0.
Fast Antibiotic Susceptibility testing via Raman Microspectrometry on Single Bacteria: An MRSA Case study
Authors: Rousseau AN, Faure N, Rol F, Sedaghat Z, Le Galudec J, Mallard F, Josso Q.
ACS Omega. 2021 Jun 15;6(25):16273-16279. doi: 10.1021/acsomega.1c00170
Author Correction: Dynamic single-cell phenotyping of immune cells using the microfluidic platform DropMap
Authors: Bounab Y, Eyer K, Dixneuf S, Rybczynska M, Chauvel C, Mistretta M, Tran T, Aymerich N, Chenon G, Llitjos JF, Venet F, Monneret G, Gillespie IA, Cortez P, Moucadel V, Pachot A, Troesch A, Leissner P, Textoris J, Bibette J, Guyard C, Baudry J, Griffiths AD, Védrine C.
Nat Protoc. 2021 Jan 13. doi: 10.1038/s41596-021-00492-7.
2020
The impact of the Fungus-Host-Microbiota interplay upon Candida albicans infections: current knowledge and new perspectives.
Authors: d’Enfert C, Kaune AK, Alaban LR, Chakraborty S, Cole N, Delavy M, Kosmala D, Marsaux B, Fróis-Martins R, Morelli M, Rosati D, Valentine M, Xie Z, Emritloll Y, Warn PA, Bequet F, Bougnoux ME, Bornes S, Gresnigt MS, Hube B, Jacobsen ID, Legrand M, Leibundgut-Landmann S, Manichanh C, Munro CA, Netea MG, Queiroz K, Roget K, Thomas V, Thoral C, Van den Abbeele P, Walker AW, Brown AJP.
FEMS Microbiol Rev. 2020 Nov 24:fuaa060. doi: 10.1093/femsre/fuaa060.
Safety biomarkers for development of vaccines and biologics: Report from the safety biomarkers symposium held on November 28-29, 2017, Marcy l’Etoile, France.
Authors: Doubovetzky M, Ataman-Önal Y, Chousterman B, Feroldi E, Garçon N, Grillet MH, Kramer D, Laurent S, Lewis DJM, Luna E, Manigold T, Syntin P, Burdin N, Fraisse L, Jackson N.Vaccine. 2020 Dec 3;38(51):8055-8063. doi: 10.1016/j.vaccine.2020.10.015.
An integrated transcriptomics and metabolomics study of the immune response of newly hatched chicks to the cytosine-phosphate-guanine oligonucleotide stimulation.
Authors: Ouattara DA, Remolue L, Becker J, Perret M, Bunescu A, Hennig K, Biliaut E, Badin A, Giacomini C, Reynier F, Andreoni C, Béquet F, Lecine P, De Luca K.
Poult Sci. 2020 Sep;99(9):4360-4372. doi: 10.1016/j.psj.2020.06.017.
Draft Genome Sequences of 15 Bacterial Species Constituting the Stable Defined Intestinal Microbiota of the GM15 Gnotobiotic Mouse Model.
Authors: Elie C, Mathieu A, Saliou A, Villain A, Darnaud M, Leulier F, Tamellini A.
Microbiol Resour Announc. 2020 Aug 27;9(35):e00686-20. doi: 10.1128/MRA.00686-20
Caecal microbiota compositions from 7-day-old chicks reared in high-performance and low-performance industrial farms and systematic culturomics to select strains with anti-Campylobacter activity
Authors: Duquenoy A, Ania M, Boucher N, Reynier F, Boucinha L, Andreoni C, Thomas V.
PLoS One. 2020 Aug 24;15(8):e0237541. doi: 10.1371/journal.pone.0237541
Dynamic single-cell phenotyping of immune cells using the microfluidic platform DropMap
Authors: Bounab Y, Eyer K, Dixneuf S, Rybczynska M, Chauvel C, Mistretta M, Tran T, Aymerich N, Chenon G, Llitjos JF, Venet F, Monneret G, Gillespie IA, Cortez P, Moucadel V, Pachot A, Troesch A, Leissner P, Textoris J, Bibette J, Guyard C, Baudry J, Griffiths AD, Védrine C.
Nat Protoc. 2020 Sep;15(9):2920-2955. doi: 10.1038/s41596-020-0354-0
Assessment of Gram- and Viability-Staining Methods for Quantifying Bacterial Community Dynamics Using Flow Cytometry
Duquenoy A, Bellais S, Gasc C, Schwintner C, Dore J, Thomas V.
Front Microbiol. 2020 Jun 26;11:1469. doi: 10.3389/fmicb.2020.01469
The science of vaccine safety: Summary of meeting at Wellcome Trust.
Authors: Plotkin SA, Offit PA, DeStefano F, Larson HJ, Arora NK, Zuber PLF, Fombonne E, Sejvar J, Lambert PH, Hviid A, Halsey N, Garçon N, Peden K, Pollard AJ, Markowitz LE, Glanz J.
Vaccine. 2020 Feb 18;38(8):1869-1880. doi: 10.1016/j.vaccine.2020.01.024
Antibiotic resistance: Tools for effective translational research
Therapie. 2020 Jan-Feb;75(1):7-12. doi: 10.1016/j.therap.2019.12.003. Epub 2019 Dec 16.
Stiffness, pain and joint counts in chronic chikungunya disease: relevance to disability and quality of life
Authors: Clin Rheumatol. 2020 May;39(5):1679-1686. doi: 10.1007/s10067-019-04919-1
Characterization and analytical validation of a new antigenic rapid diagnostic test for Ebola virus disease detection
Authors: Couturier C, Wada A, Louis K, Mistretta M, Beitz B, Povogui M, Ripaux M, Mignon C, Werle B, Lugari A, Pannetier D, Godard S, Bocquin A, Mely S, Béavogui I, Hébélamou J, Leuenberger D, Leissner P, Yamamoto T, Lécine P, Védrine C, Chaix J.
PLoS Negl Trop Dis. 2020 Jan 17;14(1):e0007965. doi: 10.1371/journal.pntd.0007965
Evaluation of integrative clustering methods for the analysis of multi-omics data
Authors: Chauvel C, Novoloaca A, Veyre P, Reynier F, Becker J
Brief Bioinform. 2020 Feb 14. pii: bbz015. doi: 10.1093/bib/bbz015
2019
Chagas Disease Drug Discovery: Multiparametric Lead Optimization against Trypanosoma cruzi in Acylaminobenzothiazole Series
Authors: Charlotte Fleau, Angel Padilla, Juan Miguel-Siles, Maria T. Quesada-Campos, Isabel Saiz-Nicolas, Ignacio Cotillo, Juan Cantizani Perez, Rick L. Tarleton, Maria Marco and Gilles Courtemanche.
J. Med. Chem. 2019, 62, 10362−10375
https:// pubs.acs.org/jmc
Metagenomic Investigation of Torque Teno Mini Virus-SH in Hematological Patients.
Authors: Bal A, Oriol G, Josset L, Generenaz L, Sarkozy C, Sesques P, Salles G, Morfin F, Lina B, Becker J, Reynier F, Mallet F, Pachot A, Cheynet V, Brengel-Pesce K, Trouillet-Assant S.
Front Microbiol. 2019 Sep 18;10:1898. doi: 10.3389/fmicb.2019.01898.
2HybridTools, a handy software to facilitate clone identification and mutation mapping from yeast two-hybrid screening
Authors: Cauchy P, Kahn-Perlès B, Ferrier P, Imbert J, Lécine P.
PeerJ. 2019 Jul 3;7:e7245. doi: 10.7717/peerj.7245. eCollection 2019.
SATQPCR: Website or statistical analysis of real-timequantitative PCR data
Authors: RMol Cell Probes, 2019 Aug;46:101418.doi: 10.1016/j.mcp.2019.07.001
Metabolomics, lipidomics and proteomics profiling of myoblasts infected with Trypanosoma cruzi after treatment with different drugs against Chagas disease
Authors: Hennig K., Abi‑Ghanem J., Bunescu A., Meniche X., Biliaut E., Ouattara A. D., Lewis M. D., Kelly J. M., Braillard S., Courtemanche G., Chatelain E., Béquet F.
Metabolomics (2019) 15:117 https://doi.org/10.1007/s11306-019-1583-5
Early herpes and TTV DNAemia in septic shock patients: a pilot study
Authors: Mallet F, Perret M, Tran T, Meunier B, Guichard A, Tabone O, Mommert M, Brengel-Pesce K, Venet F, Pachot A, Monneret G, Reynier F, Védrine C, Leissner P, Mouscadel V, Lepape A, Textoris J, MIPrea Group, REALISM group
Journal Intensive Care Med Exp. 2019
Combination of ribosome display and next generation sequencing as a powerful method for identification of affibody binders against β-lactamase CTX-M15
Authors: Lagoutte P, Lugari A, Elie C, Potisopon S, Donnat S, Mignon C, Mariano N, Troesch A, Werle B, Stadthagen G.;
Journal: N Biotechnol. 2019 May 25;50:60-69
Safety of AS03-adjuvanted influenza vaccines: A review of the evidence.
Authors: Cohet C, van der Most R, Bauchau V, Bekkat-Berkani R, Doherty TM, Schuind A, Tavares Da Silva F, Rappuoli R, Garçon N, Innis BL. Vaccine. 2019
Polymorphisms of a Collagen-Like Adhesin Contributes to Legionella pneumophila Adhesion, Biofilm Formation Capacity and Clinical Prevalence.
Authors: Abdel-Nour M, Su H, Duncan C, Li S, Raju D, Shamoun F, Valton M, Ginevra C, Jarraud S, Guyard C, Kerman K, Terebiznik MR. Front Microbiol. 2019.
2018
Translocation and calmodulin-activation of the adenylate cyclase toxin (CyaA) of Bordetella pertussis
Authors: Voegele A, O’Brien DP, Subrini O, Sapay N, Cannella SE, Enguéné VYN, Hessel A, Karst J, Hourdel V, Perez ACS, Davi M, Veneziano R, Chopineau J, Vachette P, Durand D, Brier S, Ladant D, Chenal A.
Journal: Pathog Dis.
Metagenomics next generation sequencing reveals individual composition and dynamics of anelloviruses during autologous stem cell Transplant Recipient Management
Authors: Bal A, Sarkozy C, Josset L, Cheynet V, Oriol G, Becker J, Vilchez G, Sesques P, Mallet F, Pachot A, Morfin F, Lina B, Salles G, Reynier F, Trouillet-Assant S, Brengel-Pesce K.
Journal: Viruses
Simultaneous surface display and cargo loading of encapsulin nanocompartments and their use for rational vaccine design
Authors: Lagoutte P, Mignon C, Stadthagen G, Potisopon S, Donnat S, Mast J, Lugari A, Werle B.
Journal: Vaccine
A steam-based method to investigate biofilm
Authors: Tasse J, Cara A, Saglio M, Villet R, Laurent F.
Journal: Sci Rep.
Biosensors for the Detection of Interaction between Legionella pneumophila Collagen-Like Protein and Glycosaminoglycans
Authors: Su H, Li S, Terebiznik M, Guyard C, Kerman K.
Journal: Sensors (Basel).
A modular transcriptional signature identifies phenotypic heterogeneity of human tuberculosis infection
Authors: Singhania A, Verma R, Graham CM, Lee J, Tran T, Richardson M, Lecine P, Leissner P, Berry MPR, Wilkinson RJ, Kaiser K, Rodrigue M, Woltmann G, Haldar P, O’Garra A.
Journal: Nat Commun.
Small Rho GTPases and the Effector VipA Mediate the Invasion of Epithelial Cells by Filamentous Legionella pneumophila
Authors: Prashar A, Ortiz ME, Lucarelli S, Barker E, Tabatabeiyazdi Z, Shamoun F, Raju D, Antonescu C, Guyard C, Terebiznik MR.
Journal: Front Cell Infect Microbiol.
Culture-free Antibiotic-susceptibility Determination From Single-bacterium Raman Spectra
Authors: Novelli-Rousseau A, Espagnon I, Filiputti D, Gal O, Douet A, Mallard F, Josso Q.
Journal: Sci Rep.
Codon harmonization – going beyond the speed limit for protein expression
Authors: Mignon C, Mariano N, Stadthagen G, Lugari A, Lagoutte P, Donnat S, Chenavas S, Perot C, Sodoyer R, Werle B.
Journal: FEBS Press
Lactobacillus paracasei feeding improves the control of secondary experimental meningococcal infection in flu-infected mice
Authors: Belkacem N, Bourdet-Sicard R, Taha MK.
Journal: BMC Infect Dis.
2017
The human gut microbiome as source of innovation for health: Which physiological and therapeutic outcomes could we expect?
Authors: Doré J, Multon MC, Béhier JM, Affagard H, Andremont A, Barthélémy P, Batitsa R, Bonneville M, Bonny C, Boyaval G, Chamaillard M, Chevalier MP, Cordaillat-Simmons M, Cournarie F, Diaz I, Guillaume E, Guyard C, Jouvin-Marche E, Martin FP, Petiteau D.
Review: Therapie, Elsevier
Modulation of estrogen related receptor alpha activity by the kinesin KIF17.
Authors: Seneviratne APB, Turan Z, Hermant A, Lecine P, Smith WO, Borg JP, Jaulin F, Kreitzer G.
Journal: Oncotarget
Membrane-Active Properties of an Amphitropic Peptide from the CyaA Toxin Translocation Region
Authors: Voegele A, Subrini O, Sapay N, Ladant D, Chenal A.
Journal: Toxins (Basel).
Lactobacillus paracasei feeding improves immune control of influenza infection in mice
Authors: Belkacem N, Serafini N, Wheeler R, Derrien M, Boucinha L, Couesnon A, Cerf-Bensussan N, Gomperts Boneca I, Di Santo JP, Taha MK, Bourdet-Sicard R.
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Signal management in pharmacovigilance and human risk assessment of CpG 7909, integrating embryo-fetal and post-natal developmental toxicity studies in rats and rabbits
Authors: Delannois F, Planty C, Giordano G, Destexhe E, Stanislaus D, Da Silva FT, Stegmann JU, Thacker K, Reynaud L, Garçon N, Segal L.
Journal: Reprod Toxicol.
Cellular and molecular synergy in AS01-adjuvanted vaccines results in an early IFNγ response promoting vaccine immunogenicity
Authors: Coccia M, Collignon C, Hervé C, Chalon A, Welsby I, Detienne S, Helden MJV, Dutta S, Genito CJ, Waters NC, Deun KV, Smilde AK, Berg RAVD, Franco D, Bourguignon P, Morel S, Garçon N, Lambrecht BN, Goriely S, Most RV, Didierlaurent AM.
Journal: NPJ Vaccines
Different Adjuvants Induce Common Innate Pathways That Are Associated with Enhanced Adaptive Responses against a Model Antigen in Humans
Authors: Burny W, Callegaro A, Bechtold V, Clement F, Delhaye S, Fissette L, Janssens M, Leroux-Roels G, Marchant A, van den Berg R. A, Garçon N, van der Most R and Didierlaurent Arnaud M. On Behalf of the ECR-002 Study Group
Journal: Frontiers in Immunology
The REAnimation Low Immune Status Markers (REALISM) project: a protocol for broad characterisation and follow-up of injury-induced immunosuppression in intensive care unit (ICU) critically ill patients
Authors: Rol ML, Venet F, Rimmele T, Moucadel V, Cortez P, Quemeneur L, Gardiner D, Griffiths A, Pachot A, Textoris J, Monneret G; REALISM study group.
Journal: BMJ Open
Intramuscularly administered herpes zoster subunit vaccine has no effects on fertility, pre- and post-natal development in Sprague-Dawley rats
Authors: Segal L, Thacker K, Fochesato M, Giordano G, Garçon N, Destexhe E.
Journal: Reprod Toxicol.
Type I interferon-mediated autoinflammation due to DNase II deficiency
Authors: Rodero M.P , Tesser A, Bartok E, Rice G. I. , Della Mina E , Depp M, Beitz B, Bondet V, Cagnard N, Duffy D, Dussiot M, Frémond M-L, Gattorno M, Guillem F, Kitabayashi N, Porcheray F, Rieux-Laucat F, Seabra L, Uggenti C, Volpi S, Zeef L.A.H , Alyanakian M-A, Beltrand J, Bianco A-M, Boddaert N, Brouzes C, Candon S, Caorsi R, Charbit M, Fabre M, Faletra F, Girard M, Harroche A, Hartmann E, Lasne D, Marcuzzi A, Neven B, Nitschke P, Pascreau T, Pastore S, Picard C, Picco P,Piscianz E, Polak M, Quartier P, Rabant M, Stocco G, Taddio A, Uettwiller F, Valencic E, Vozzi D, Hartmann G, Barchet W, Hermine O, Bader-Meunier B, Tommasini A & Crow Y.J
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Respiratory Syncytial Virus Infects Regulatory B Cells in Human Neonates via Chemokine Receptor CX3CR1 and Promotes Lung Disease Severity
Authors: Zhivaki D, Lemoine S, Lim A, Morva A, Vidalain P-O, Schandene L, Casartelli N, Rameix-Welti M-A, Herve P-L , Dériaud E, Beitz B, Ripaux-Lefevre M, Miatello J, Lemercier B, Lorin V, Descamps D, Fix J, Eléouët J-F et Riffault S , Schwartz O, Porcheray F, Mascart F, Mouquet H, Zhang X, Tissières P and Lo-Man R.
Journal: Immunity
Adjuvant system AS01: helping to overcome the challenges of modern vaccines
Authors: Didierlaurent AM, Laupèze B, Di Pasquale A, Hergli N, Collignon C, Garçon N.
Journal: Expert Rev Vaccines
From discovery to licensure, the Adjuvant System story
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Journal: Hum Vaccin Immunother
Non-conventional expression systems for the production of vaccine proteins and immunotherapeutic molecules
Authors: Legastelois I, Buffin S, Peubez I, Mignon C, Sodoyer R,Werle B
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Clinical, virological, and biological parameters associated with outcomes of Ebola virus infection in Macenta, Guinea
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Journal: JCI Insight Cedratvirus lausannensis – digging into Pithoviridae diversity
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Cedratvirus lausannensis – digging into Pithoviridae diversity.
Bertelli C, Mueller L, Thomas V, Pillonel T, Jacquier N, Greub G.
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SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence
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Chapitre: Les vaccins ou deux siècles de biotechnologies
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From discovery to licensure, the Adjuvant System story
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Vaccine safety evaluation: Practical aspects in assessing benefits and risks
Authors: Di Pasquale A, Bonanni P, Garçon N, Stanberry LR, El-Hodhod M, Tavares Da Silva F.
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Journal: Vaccine
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Zika antiviral chemotherapy: identification of drugs and promising starting points for drug discovery from an FDA-approved library
Authors: Pascoalino B.S, Courtemanche G, Cordeiro M.T, Gil L. H. V. G. , Freitas-Junior L
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Impact of adjuvants on CD4(+) T cell and B cell responses to a protein antigen vaccine: Results from a phase II, randomized, multicenter trial
Authors: Leroux-Roels G, Marchant A, Levy J, Van Damme P, Schwarz TF, Horsmans Y, Jilg W, Kremsner PG, Haelterman E, Clément F, Gabor JJ, Esen M, Hens A, Carletti I, Fissette L, Tavares Da Silva F, Burny W, Janssens M, Moris P, Didierlaurent AM, Van Der Most R, Garçon N, Van Belle P, Van Mechelen M.
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Reducing hypoxia and inflammation during invasive pulmonary aspergillosis by targeting the Interleukin-1 receptor
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Chapter 5: Hydrophilic Interaction Liquid Chromatography (HILIC) and Perfluorinated Stationary Phases, pp. 149-184
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Legionella CRISPR-Cas reveals a recurrent challenge to the pathogen
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Scalable chromatography-based purification of virus-like particle carrier for epitope based Influenza A vaccine produced in Escherichia coli
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Non-clinical safety evaluation of repeated intramuscular administration of the AS15 immunostimulant combined with various antigens in rabbits and cynomolgus monkeys
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2015
Differential proteomic analysis of virus-enriched fractions obtained from plasma pools of patients with dengue fever or severe dengue
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Draft Genome Sequences of Acinetobacter parvus CM11, Acinetobacter radioresistens CM38, and Stenotrophomonas maltophilia BR12, Isolated from Murine Proximal Colonic Tissue
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Vaccine Adjuvants: from 1920 to 2015 and Beyond
Authors: Di Pasquale A, Preiss S, Tavares Da Silva F, Garçon N.
Journal: Vaccines
Antibiotic free selection in Biotherapeutics
Authors: Mignon C. , Sodoyer R. , Werle B.
Journal: Antibiotic free selection in Biotherapeutics: Now and Forever, Pathogens
A FACS-optimized screen identifies regulators of genome stability in Candida albicans
Authors: Loll-Krippleber R, Feri A, Nguyen M, Maufrais C, Yansouni J, d’Enfert C, Legrand M
Journal: Eukaryot Cell.
Non clinical reproductive and developmental safety evaluation of he MAGE-A3 Cancer Immunotherapeutic, a therapeutic vaccine for cancer treatment
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Journal: Elsevier, Reproductive toxicology Volume 51